Photographer: Teska Overbeeke

prof. dr. P.M.A. (Peter) Sloot


  • Faculty of Science
    Informatics Institute
  • Visiting address
    OTM 145-147
    Room number: IAS
  • Postal address:
  • P.M.A.Sloot@uva.nl
    T: 0205252863
    T: 0651564723

Feel free to visit my home pages by clicking on the link below

2017

  • Roy, D., Lees, M. H., Pfeffer, K., & Sloot, P. M. A. (2017). Modelling the impact of household life cycle on slums in Bangalore. Computers, Environment and Urban Systems, 64, 275-287. DOI: 10.1016/j.compenvurbsys.2017.03.008  [details] 
  • de Graaf, C. S. L., Kandhai, D., & Sloot, P. M. A. (2017). Efficient Estimation of Sensitivities for Counterparty Credit Risk with the Finite Difference Monte Carlo Method. Journal of Computational Finance, 21(1), 83-113. DOI: 10.2139/ssrn.2521431 , 10.21314/JCF.2016.325  [details] 
  • Kovalchuk, S. V., Abuhay, T. M., Altintas, I., Norman, M. L., Lees, M. H., Krzhizhanovskaya, V. V., ... Sloot, P. M. A. (2017). Data through the Computational Lens. Journal of Computational Science, 20, 81-84. DOI: 10.1016/j.jocs.2017.05.003  [details] 
  • Quax, R., Har-Shemesh, O., & Sloot, P. M. A. (2017). Quantifying Synergistic Information Using Intermediate Stochastic Variables. Entropy, 19(2), [85]. DOI: 10.3390/e19020085  [details] 
  • Sloot, P. M. A. (2017). More likely we would be ritually slaughtered. In S. Thurner (Ed.), 43 Visions for Complexity (pp. 65-66). (Exploring complexity; Vol. 3). Singapore: World Scientific Publishing Co. Pte. Ltd. DOI: 10.1142/9789813206854_0033  [details] 
  • Traag, V. A., Quax, R., & Sloot, P. M. A. (2017). Modelling the distance impedance of protest attendance. Physica A: Statistical Mechanics and its Applications, 468, 171-182. DOI: 10.1016/j.physa.2016.10.054  [details] 
  • Car, J., Tan, W. S., Huang, Z., Sloot, P., & Franklin, B. D. (2017). eHealth in the future of medications management: personalisation, monitoring and adherence. BMC Medicine, 15, [73]. DOI: 10.1186/s12916-017-0838-0  [details] 
  • Koumoutsakos, P., Chatzi, E., Krzhizhanovskaya, V. V., Lees, M., Dongarra, J., & Sloot, P. M. A. (2017). The Art of Computational Science, Bridging Gaps - Forming Alloys: Preface for ICCS 2017. Procedia Computer Science, 108, 1-6. DOI: 10.1016/j.procs.2017.05.281 
  • Melnikov, V., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2017). Models of Pedestrian Adaptive Behaviour in Hot Outdoor Public Spaces. Procedia Computer Science, 108, 185-194. DOI: 10.1016/j.procs.2017.05.006  [details] 
  • Presbitero, A., Quax, R., Krzhizhanovskaya, V., & Sloot, P. (2017). Anomaly Detection in Clinical Data of Patients Undergoing Heart Surgery. Procedia Computer Science, 108, 99-108. DOI: 10.1016/j.procs.2017.05.002  [details] 

2016

  • Altintas, I., Norman, M., Lees, M., Krzhizhanovskaya, V. V., Dongarra, J., & Sloot, P. M. A. (2016). Data through the Computational Lens, Preface for ICCS 2016. Procedia Computer Science, 80, 1-7. DOI: 10.1016/j.procs.2016.05.426  [details] 
  • Har-Shemesh, O., Quax, R., Miñano, B., Hoekstra, A. G., & Sloot, P. M. A. (2016). Nonparametric estimation of Fisher information from real data. Physical Review E, 93(2), [023301]. DOI: 10.1103/PhysRevE.93.023301  [details] 
  • Har-Shemesh, O., Quax, R., Hoekstra, A. G., & Sloot, P. M. A. (2016). Information geometric analysis of phase transitions in complex patterns: the case of the Gray-Scott reaction-diffusion model. Journal of Statistical Mechanics : Theory and Experiment, 2016(4), [043301]. DOI: 10.1088/1742-5468/2016/04/043301  [details] 
  • Donald Combs, C., Barham, S. R., & Sloot, P. M. A. (2016). Systems Biology and Health Systems Complexity in; In The Digital Patient: Advancing Healthcare, Research, and Education. (pp. 73-84). John Wiley & Sons, Inc.. DOI: 10.1002/9781118952788.ch7  [details] 
  • Presbitero, A., Krzhizhanovskaya, V., Mancini, E., Brands, R., & Sloot, P. (2016). Immune System Model Calibration by Genetic Algorithm. Procedia Computer Science, 101, 161-171. DOI: 10.1016/j.procs.2016.11.020  [details] 
  • Presbitero, A., Krzhizhanovskaya, V., Mancini, E., Brands, R., & Sloot, P. (2016). Reproducibility of Two Innate Immune System Models. In A. V. Chugunov, R. Bolgov, Y. Kabanov, G. Kampis, & M. Wimmer (Eds.), Digital Transformation and Global Society: First International Conference, DTGS 2016, St. Petersburg, Russia, June 22-24, 2016 : revised selected papers (pp. 501-514). (Communications in Computer and Information Science; Vol. 674). Cham: Springer. DOI: 10.1007/978-3-319-49700-6_50  [details] 
  • Viswanathan, V., Lees, M., & Sloot, P. M. A. (2016). The influence of memory on indoor environment exploration: A numerical study. Behavior Research Methods, 48(2), 621-639. DOI: 10.3758/s13428-015-0604-1  [details] 

2015

  • Merelli, E., Rucco, M., Sloot, P., & Tesei, L. (2015). Topological Characterization of Complex Systems: Using Persistent Entropy. Entropy, 17(10), 6872-6892. DOI: 10.3390/e17106872  [details] 
  • Javaheri, N., Dries, R., Burson, A., Stal, L. J., Sloot, P. M. A., & Kaandorp, J. A. (2015). Temperature affects the silicate morphology in a diatom. Scientific Reports, 5, [11652]. DOI: 10.1038/srep11652  [details] 
  • Krzhizhanovskaya, V. V., Dukhanov, A. V., Bilyatdinova, A., Boukhanovsky, A. V., & Sloot, P. M. A. (2015). Russian-Dutch double-degree Master’s programme in computational science in the age of global education. Journal of Computational Science, 10, 288-298. DOI: 10.1016/j.jocs.2015.05.001  [details] 
  • Mei, S., Chen, B., Zhu, Y., Lees, M. H., Boukhanovsky, A. V., & Sloot, P. M. A. (2015). Simulating city-level airborne infectious diseases. Computers, Environment and Urban Systems, 51, 97-105. DOI: 10.1016/j.compenvurbsys.2014.12.002  [details] 
  • Mei, S., Zarrabi, N., Lees, M., & Sloot, P. M. A. (2015). Complex agent networks: An emerging approach for modeling complex systems. Applied Soft Computing, 37, 311-321. DOI: 10.1016/j.asoc.2015.08.010  [details] 
  • Melnikova, N., Jordan, D., Krzhizhanovskaya, V., & Sloot, P. (2015). Numerical prediction of the IJkDijk trial embankment failure. Proceedings of the Institution of Civil Engineers. Geotechnical Engineering, 168(2), 158-171. DOI: 10.1680/geng.14.00040  [details] 
  • Pyayt, A. L., Shevchenko, D. V., Kozionov, A. P., Mokhov, I. I., Lang, B., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2015). Combining data-driven methods with finite element analysis for flood early warning systems. Procedia Computer Science, 51, 2347-2356. DOI: 10.1016/j.procs.2015.05.404  [details] 
  • Duijn, P. A. C., & Sloot, P. M. A. (2015). From Data to Disruption. Digital Investigation, 11, 39-45. DOI: 10.1016/j.diin.2015.09.005  [details] 
  • Koziel, S., Leifsson, L., Lees, M., Krzhizhanovskaya, V. V., Dongarra, J., & Sloot, P. M. A. (2015). Computational Science at the Gates of Nature, preface for ICCS 2015. Procedia Computer Science, 51, 1-8. DOI: 10.1016/j.procs.2015.05.177  [details] 
  • Melnikov, V. R., Krzhizhanovskaya, V. V., Boukhanovsky, A. V., & Sloot, P. M. A. (2015). Data-driven modeling of transportation systems and traffic data analysis during a major power outage in the Netherlands. Procedia Computer Science, 66, 336-345. DOI: 10.1016/j.procs.2015.11.039  [details] 

2014

  • Bui, Q. C., Sloot, P. M. A., van Mulligen, E. M., & Kors, J. A. (2014). A novel feature-based approach to extract drug-drug interactions from biomedical text. Bioinformatics, 30(23), 3365-3371. DOI: 10.1093/bioinformatics/btu557  [details] 
  • Duan, W., Quax, R., Lees, M., Qiu, X., & Sloot, P. M. A. (2014). Topology dependent epidemic spreading velocity in weighted networks. Journal of Statistical Mechanics : Theory and Experiment, 2014(12), [P12020]. DOI: 10.1088/1742-5468/2014/12/P12020  [details] 
  • Erdbrink, C. D., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2014). Evolutionary Design of Numerical Methods: Generating Finite Difference and Integration Schemes by Differential Evolution. ArXiv e-prints.
  • Erdbrink, C. D., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2014). Free-surface flow simulations for discharge-based operation of hydraulic structure gates. Journal of Hydroinformatics, 16(1), 189-206. DOI: 10.2166/hydro.2013.215  [details] 
  • Erdbrink, C. D., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2014). Reducing cross-flow vibrations of underflow gates: experiments and numerical studies. Journal of Fluids and Structures, 50, 25-48. DOI: 10.1016/j.jfluidstructs.2014.06.010  [details] 
  • Mei, S., Zhu, Y., Qiu, X., Zhou, X., Zu, Z., Boukhanovsky, A. V., & Sloot, P. M. A. (2014). Individual decision making can drive epidemics: a fuzzy cognitive map study. IEEE Transactions on Fuzzy Systems, 22(2), 264-273. DOI: 10.1109/TFUZZ.2013.2251638  [details] 
  • Pyayt, A. L., Kozionov, A. P., Kusherbaeva, V. T., Mokhov, I. I., Krzhizhanovskaya, V. V., Broekhuijsen, B. J., ... Sloot, P. M. A. (2014). Signal analysis and anomaly detection for flood early warning systems. Journal of Hydroinformatics, 16(5), 1025-1043. DOI: 10.2166/hydro.2014.067  [details] 
  • Pyayt, A. L., Kozionov, A. P., Mokhov, I. I., Lang, B., Meijer, R. J., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2014). Time-frequency Methods for Structural Health Monitoring. Sensors, 14(3), 5147-5173. DOI: 10.3390/s140305147  [details] 
  • Roy, D., Lees, M. H., Palavalli, B., Pfeffer, K., & Sloot, M. A. P. (2014). The emergence of slums: A contemporary view on simulation models. Environmental Modelling & Software, 59, 76-90. DOI: 10.1016/j.envsoft.2014.05.004  [details] 
  • Bilyatdinova, A., Dukhanov, A., Bochenina, K., Boukhanovsky, A. V., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2014). Dutch-Russian Double Degree Master's Program Curricula in Computational Science and High Performance Computing. In 2014 IEEE Frontiers in Education Conference: FIE 2014 : Opening Innovations and Internationalization in Engineering Education : October 22-25, 2014, Madrid, Spain, Melia Castilla Hotel & Convention Center : proceedings Piscataway, NJ: IEEE. DOI: 10.1109/FIE.2014.7044195  [details] 
  • Cheong, S. A., Tan, T. L., Chen, C-C., Chang, W-L., Liu, Z., Chew, L. Y., ... Johnson, N. F. (2014). Short-Term Forecasting of Taiwanese Earthquakes Using a Universal Model of Fusion-Fission Processes. Scientific Reports, 4, [3624]. DOI: 10.1038/srep03624  [details] 
  • Dijkstra, L. J., Yakushev, A. V., Duijn, P. A. C., Boukhanovsky, A. V., & Sloot, P. M. A. (2014). Inference of the Russian drug community from one of the largest social networks in the Russian Federation. Quality and Quantity, 48(5), 2739-2755. DOI: 10.1007/s11135-013-9921-6  [details] 
  • Duijn, P. A. C., Kashirin, V., & Sloot, P. M. A. (2014). The Relative Ineffectiveness of Criminal Network Disruption. Scientific Reports, 4, [4238]. DOI: 10.1038/srep04238  [details] 
  • Dukhanov, A. V., Krzhizhanovskaya, V. V., Bilyatdinova, A., Boukhanovsky, A. V., & Sloot, P. M. A. (2014). Double-degree Master's Program in Computational Science: Experiences of ITMO University and University of Amsterdam. Procedia Computer Science, 29, 1433-1445. DOI: 10.1016/j.procs.2014.05.130  [details] 
  • Mordvintsev, A. S., Krzhizhanovskaya, V. V., Lees, M. H., & Sloot, P. M. A. (2014). Simulation of City Evacuation Coupled to Flood Dynamics. In U. Weidmann, U. Kirsch, & M. Schreckenberg (Eds.), Pedestrian and Evacuation Dynamics 2012 (pp. 485-499). Cham: Springer. DOI: 10.1007/978-3-319-02447-9_40  [details] 
  • Viswanathan, V., Lee, C. E., Lees, M. H., Cheong, S. A., & Sloot, P. M. A. (2014). Quantitative Comparison Between Crowd Models for Evacuation Planning and Evaluation. The European Physical Journal B. Condensed Matter Physics, 87(2), 27. [27]. DOI: 10.1140/epjb/e2014-40699-x  [details] 

2013

2012

  • Bui, Q. C., & Sloot, P. M. A. (2012). A robust approach to extract biomedical events from literature. Bioinformatics, 28(20), 2654-2661. DOI: 10.1093/bioinformatics/bts487  [details] 
  • Erdbrink, C. D., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2012). Controlling flow-induced vibrations of flood barrier gates with data-driven and finite-element modelling. In F. Klijn, & T. Schweckendiek (Eds.), Comprehensive flood risk management: research for policy and practice (pp. 425-434). Boca Raton, FL: CRC Press. [details] 
  • Mancini, E., Gastiglione, F., Bernaschi, M., de Luca, A., & Sloot, P. M. A. (2012). HIV reservoirs and immune surveillance evasion cause the failure of structured treatment interruptions: a computational study. PLoS One, 7(4), [e36108]. DOI: 10.1371/journal.pone.0036108  [details] 
  • Qiu, G., Kandhai, D., Johnson, N. F., & Sloot, P. M. A. (2012). Understanding complex dynamics in derivatives finance: why do options markets smile? Advances in Complex Systems, 15(5), [1250050]. DOI: 10.1142/S0219525912500506  [details] 
  • Zarrabi, N., Prosperi, M., Belleman, R. G., Colafigli, M., De Luca, A., & Sloot, P. M. A. (2012). Combining epidemiological and genetic networks signifies the importance of early treatment in HIV-1 transmission. PLoS One, 7(9), e46156. DOI: 10.1371/journal.pone.0046156  [details] 
  • Adamatzky, A., Akl, S., Alonso-Sanz, R., van Dessel, W., Ibrahim, Z., Ilachinski, A., ... Yang, X-S. (2012). Biorationality of motorways. In A. Adamatzky (Ed.), Bioevaluation of world transport networks (pp. 309-325). Singapore: World Scientific. [details] 
  • Adamatzky, A., Lees, M., & Sloot, P. M. A. (2012). Physarum in the Netherlands: responding to the flood. In A. Adamatzky (Ed.), Bioevaluation of world transport networks (pp. 213-234). Singapore: World Scientific. [details] 

2011

  • Altintas, I., Anand, M. K., Vuong, T. N., Bowers, S., Ludäscher, B., & Sloot, P. M. A. (2011). A data model for analyzing user collaborations in workflow-driven e-Science. The International Journal of Computers and Their Applications (IJCA), 18(3), 160-179. [details] 
  • Bui, Q. C., Katrenko, S., & Sloot, P. M. A. (2011). A hybrid approach to extract protein-protein interactions. Bioinformatics, 27(2), 259-265. DOI: 10.1093/bioinformatics/btq620  [details] 
  • Mei Shan, A., Quax, R., van de Vijver, D., Zhu, Y., & Sloot, P. M. A. (2011). Increasing risk behaviour can outweigh the benefits of antiretroviral drug treatment on the HIV incidence among men-having-sex-with-men in Amsterdam. BMC Infectious Diseases, 11(118). DOI: 10.1186/1471-2334-11-118  [details] 
  • Mościcki, J. T., Lamanna, M., Bubak, M., & Sloot, P. M. A. (2011). Processing moldable tasks on the grid: late job binding with lightweight user-level overlay. Future Generation Computer Systems, 27(6), 725-736. DOI: 10.1016/j.future.2011.02.002  [details] 
  • Murtaza, S., Hoekstra, A. G., & Sloot, P. M. A. (2011). Cellular automata simulations on a FPGA cluster. International Journal of High Performance Computing Applications, 25(2), 193-204. DOI: 10.1177/1094342010383138  [details] 
  • Naumov, L., Hoekstra, A., & Sloot, P. (2011). Cellular automata models of tumour natural shrinkage. Physica A : Statistical Mechanics and its Applications, 390(12), 2283-2290. DOI: 10.1016/j.physa.2011.02.006  [details] 
  • Quax, R., Bader, D. A., & Sloot, P. M. A. (2011). SEECN: simulating complex systems using dynamic complex networks. International Journal for Multiscale Computational Engineering, 9(2), 201-214. DOI: 10.1615/IntJMultCompEng.v9.i2.50  [details] 
  • Bankhead, A., Mancini, E., Sims, A. C., Baric, R. S., McWeeney, S., & Sloot, P. M. A. (2011). A simulation framework to investigate in vitro viral infection dynamics. Procedia Computer Science, 4, 1798-1807. DOI: 10.1016/j.procs.2011.04.195  [details] 

2010

  • Altintas, I., Anand, M. K., Crawl, D., Bowers, S., Belloum, A., Missier, P., ... Sloot, P. M. A. (2010). Understanding collaborative studies through interoperable workflow provenance. Lecture Notes in Computer Science, 6378, 42-58. DOI: 10.1007/978-3-642-17819-1_6  [details] 
  • Bui, Q. C., Ó Nualláin, B., Boucher, C. A., & Sloot, P. M. A. (2010). Extracting causal relations on HIV drug resistance from literature. BMC Bioinformatics, 11, 101. DOI: 10.1186/1471-2105-11-101  [details] 
  • Cui, J., Kaandorp, J. A., Sloot, P. M. A., & Thiagarajan, P. S. (2010). Simulating Calcineurin-Centered Calcium Signaling Network in Cardiac Myocytes. In J. E. García, & V. R. Wright (Eds.), Congestive heart failure: symptoms, causes and treatment. (pp. 111-127). (Cardiology research and clinical developments). New York: Nova Publishers. [details] 
  • Mei, S., van de Vijver, D., Xuan, L., Zhu, Y., & Sloot, P. M. A. (2010). Quantitatively evaluating interventions in the influenza A (H1N1) epidemic on China campus grounded on individual-based simulations. Procedia Computer Science, 1, 1675-1682. DOI: 10.1016/j.procs.2010.04.187  [details] 
  • Mei, S., Sloot, P. M. A., Quax, R., Zhu, Y., & Wang, W. (2010). Complex agent networks explaining the HIV epidemic among homosexual men in Amsterdam. Mathematics and Computers in Simulation, 80(5), 1018-1030. DOI: 10.1016/j.matcom.2009.12.008  [details] 
  • Naumov, L., Hoekstra, A., & Sloot, P. (2010). The influence of mitoses rate on growth dynamics of a cellular automata model of tumour growth. Procedia Computer Science, 1, 971-978. DOI: 10.1016/j.procs.2010.04.107  [details] 
  • Qiu, G., Kandhai, D., & Sloot, P. M. A. (2010). Modeling options markets by focusing on active tradersr. Procedia Computer Science, 1, 2457-2462. DOI: 10.1016/j.procs.2010.04.277  [details] 
  • Sloot, P. M. A., & Hoekstra, A. G. (2010). Multi-scale modelling in computational biomedicine. Briefings in Bioinformatics, 11(1), 142-152. DOI: 10.1093/bib/bbp038  [details] 
  • Zarrabi, N., Mancini, E., Tay, J., Shahand, S., & Sloot, P. M. A. (2010). Modeling HIV-1 intracellular replication: two simulation approaches. Procedia Computer Science, 1, 555-564. DOI: 10.1016/j.procs.2010.04.059  [details] 
  • Zudilova-Seinstra, E. V., de Koning, P. J. H., Suinesiaputra, A., van Schooten, B. W., van der Geest, R. J., Reiber, J. H. C., & Sloot, P. M. A. (2010). Evaluation of 2D and 3D glove input applied to medical image analysis. International Journal of Human-Computer Studies, 68(6), 355-369. DOI: 10.1016/j.ijhcs.2009.08.001  [details] 
  • Zudilova-Seinstra, E., van Schooten, B., Suinesiaputra, A., van der Geest, R., van Dijk, B., Reiber, J., & Sloot, P. (2010). Exploring individual user differences in the 2D/3D interaction with medical image data. Virtual Reality, 14(2), 105-118. DOI: 10.1007/s10055-009-0131-4  [details] 
  • van Dijk, D., Ertaylan, G., Boucher, C. A. B., & Sloot, P. M. A. (2010). Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks. BMC Systems Biology, 4, 96. DOI: 10.1186/1752-0509-4-96  [details] 
  • van Dijk, D., Sloot, P. M. A., Tay, J. C., & Schut, M. C. (2010). Individual-based simulation of sexual selection: A quantitative genetic approach. Procedia Computer Science, 1, 2003-2011. DOI: 10.1016/j.procs.2010.04.224  [details] 
  • Frentz, D., Boucher, C. A. B., Assel, M., De Luca, A., Fabbiani, M., Incardona, F., ... van de Vijver, D. A. M. C. (2010). Comparison of HIV-1 genotypic resistance test interpretation systems in predicting virological outcomes over time. PLoS One, 5(7), e11505. DOI: 10.1371/journal.pone.0011505  [details] 
  • Jaeger, S., Ertaylan, G., van Dijk, D., Leser, U., & Sloot, P. (2010). Inference of surface membrane factors of HIV-1 infection through functional interaction networks. PLoS One, 5(10), e13139. DOI: 10.1371/journal.pone.0013139  [details] 
  • Prosperi, M. C. F., Rosen-Zvi, M., Altman, A., Zazzi, M., Di Giambenedetto, S., Kaiser, R., ... Sönnerborg, A. (2010). Antiretroviral therapy optimisation without genotype resistance testing: a perspective on treatment history based models. PLoS One, 5(10), e13753. DOI: 10.1371/journal.pone.0013753  [details] 
  • Schwiegelshohn, U., Badia, R. M., Bubak, M. T., Danelutto, M., Dustdar, S., Gagliardi, F., ... von Voigt, G. (2010). Perspectives on grid computing. Future Generation Computer Systems, 26(8), 1104-1115. DOI: 10.1016/j.future.2010.05.010  [details] 
  • Sottoriva, A., Verhoeff, J. J. C., Borovski, T., McWeeney, S. K., Naumov, L., Medema, J. P., ... Vermeulen, L. (2010). Cancer stem cell tumor model reveals invasive morphology and increased phenotypical heterogeneity. Cancer Research, 70(1), 46-56. DOI: 10.1158/0008-5472.CAN-09-3663  [details] 
  • Sottoriva, A., Sloot, P. M. A., Medema, J. P., & Vermeulen, L. (2010). Exploring cancer stem cell niche directed tumor growth. Cell Cycle, 9(8), 1472-1479. DOI: 10.4161/cc.9.8.11198  [details] 

2009

  • Axner, L., Hoekstra, A. G., Jeays, A., Lawford, P., Hose, R., & Sloot, P. M. A. (2009). Simulations of time harmonic blood flow in the Mesenteric artery: comparing finite element and lattice Boltzmann methods. BioMedical Engineering OnLine, 8, 23. DOI: 10.1186/1475-925X-8-23  [details] 
  • Bossenbroek, A., Tirado-Ramos, A., & Sloot, P. M. A. (2009). Grid resource allocation by means of option contracts. IEEE Systems Journal, 3(1), 49-64. DOI: 10.1109/JSYST.2008.2011255  [details] 
  • Cui, J., Kaandorp, J. A., Sloot, P. M. A., Lloyd, C. M., & Filatov, M. V. (2009). Calcium homeostasis and signaling in yeast cells and cardiac myocytes. FEMS Yeast Research, 9(8), 1137-1147. DOI: 10.1111/j.1567-1364.2009.00552.x  [details] 
  • Gubala, T., Bubak, M., & Sloot, P. M. A. (2009). Semantic Integration for Research Environments. In M. Cannataro (Ed.), Handbook of research on computational grid technologies for life sciences, biomedicine, and healthcare. (pp. 514-530). Hershey, Pa.: Medical Information Science Reference. [details] 
  • Kroc, J., & Sloot, P. M. A. (2009). Complex systems modeling by cellular automata. In J. R. Rabuñal Dopico, J. Dorado de la Calle, & A. Pazos Sierra (Eds.), Encyclopedia of artificial intelligence (pp. 353-360). Hershey, PA: Information Science Reference. [details] 
  • Murtaza, S., Hoekstra, A. G., & Sloot, P. M. A. (2009). Compute bound and I/O bound Cellular Automata simulations on FPGA logic. ACM Transactions on Reconfigurable Technology and Systems, 1(4), 23. [details] 
  • Quax, R., Bader, D. A., & Sloot, P. M. A. (2009). Simulating individual-based models of epidemics in hierarchical networks. Lecture Notes in Computer Science, 5544, 725-734. DOI: 10.1007/978-3-642-01970-8_72  [details] 
  • Sloot, P. M. A., Coveney, P. V., Ertaylan, G., Müller, V., Boucher, C. A., & Bubak, M. (2009). HIV decision support: From molecule to man. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 367(1898), 2691-2703. DOI: 10.1098/rsta.2009.0043  [details] 
  • Strijkers, R. J., Muller, L., Cristea, M. L., Belleman, R., de Laat, C., Sloot, P., & Meijer, R. (2009). Interactive control over a programmable computer network using a multi-touch surface. Lecture Notes in Computer Science, 5545, 719-728. DOI: 10.1007/978-3-642-01973-9_80  [details] 
  • Zudilova-Seinstra, E. V., Sloot, P. M. A., de Koning, P. J. H., Suinesiaputra, A., van der Geest, R. J., & Reiber, J. H. C. (2009). Exploring 2D/3D input techniques for medical image analysis. In E. Banissi, M. Sarfraz, F. Khosrowshahi, J. Counsell, R. Laing, C. Moore, A. J. Cowell, M. Hou, G. Y. Tian, M. Dastbaz, M. Bannatyne, J. J. Zhang, V. Scarano, R. De Chiara, U. Erra, A. Ursyn, ... H. Levkowitz (Eds.), International Conference on Information Visualisation, track Biomedical Visualization (MediViz09), Barcelona, Spain (pp. 147-152). Los Alamitos, CA: IEEE Computer Society. DOI: 10.1109/VIZ.2009.18  [details] 
  • Assel, M., van de Vijver, D., Libin, P., Theys, K., Harezlak, D., Ó Nualláin, B., ... Sloot, P. (2009). A collaborative environment allowing clinical investigations on integrated biomedical databases. Studies in Health Technology and Informatics, 147, 51-61. DOI: 10.3233/978-1-60750-027-8-51  [details] 
  • Caroprese, L., Ó Nualláin, B., Sloot, P. M. A., & Zumpano, E. (2009). A logical framework for detecting anomalies in drug resistance algorithms. ACM International Conference Proceedings Series, 23-30. [details] 

2008

  • Korkhov, V. V., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2008). A grid-based virtual reactor: Parallel performance and adaptive load balancing. Journal of Parallel and Distributed Computing, 68(5), 596-608. DOI: 10.1016/j.jpdc.2007.08.010  [details] 
  • Murtaza, S., Hoekstra, A. G., & Sloot, P. M. A. (2008). Floating point based Cellular Automata simulations using a dual FPGA-enabled system. In V. Kindratenko (Ed.), 2008 Second International Workshop on High-Performance Reconfigurable Computing Technology and Applications (HPRCTA): proceedings: held in conjunction with SC 08, Austin, TX, November 17, 2008 Piscataway, NJ: IEEE. DOI: 10.1109/HPRCTA.2008.4745686  [details] 
  • Rycerz, K., Bubak, M., & Sloot, P. M. A. (2008). Dynamic interactions in HLA component model for multiscale simulations. Lecture Notes in Computer Science, 5102, 217-226. DOI: 10.1007/978-3-540-69387-1_24  [details] 
  • Rycerz, K., Bubak, M., & Sloot, P. M. A. (2008). HLA component based environment for distributed multiscale simulations. In T. Priol, & M. Vanneschi (Eds.), From grids to service and pervasive computing (pp. 229-239). New York, NY: Springer. DOI: 10.1007/978-0-387-09455-7_17  [details] 
  • Rycerz, K., Bubak, M., & Sloot, P. M. A. (2008). HLA component model on the example of multiscale simulation. In M. Bubak, M. Turała, & K. Wiatr (Eds.), Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings. (pp. 272-275). Kraków: Academic Computer Centre CYFRONET AGH. [details] 
  • Rycerz, K., Bubak, M., & Sloot, P. M. A. (2008). Using HLA and Grid for distributed multiscale simulations. Lecture Notes in Computer Science, 4967, 780-787. DOI: 10.1007/978-3-540-68111-3_82  [details] 
  • Rycerz, K., Bubak, M., Sloot, P., & Getov, V. (2008). Problem solving environment for distributed interactive applications. In S. Gorlatch, M. Bubak, & T. Priol (Eds.), Achievements in European research on grid systems: CoreGRID Integration Workshop 2006 (selected papers), October 19-20, Krakow, Poland (pp. 55-66). New York, NY: Springer. DOI: 10.1007/978-0-387-72812-4_5  [details] 
  • Sloot, P. M. A., Ivanov, S. V., Boukhanovsky, A. V., van de Vijver, D. A. M. C., & Boucher, C. A. B. (2008). Stochastic simulation of HIV population dynamics through complex network modelling. International Journal of Computer Mathematics, 85(8), 1175-1187. DOI: 10.1080/00207160701750583  [details] 
  • Sloot, P. (2008). ViroLab: From the molecule to the man. eStrategies Projects, (4), 53-55. [details] 
  • Sloot, P., Coveney, P., Bubak, M. T., Vandamme, A-M., Ó Nuallain, B., van de Vijver, D., & Boucher, C. (2008). ViroLab: A collaborative decision support system in viral disease treatment. Reviews in Antiviral Therapy, 3, 4-7. [details] 
  • Sloot, P., Coveney, P., Bubak, M. T., Vandamme, A-M., Ó Nualláin, B., van de Vijver, D., & Boucher, C. (2008). Multi-science decision support for HIV drug resistance treatment. Studies in Health Technology and Informatics, 138, 188-198. [details] 
  • Tirado-Ramos, A., Sloot, P. M. A., & Bubak, M. (2008). Grid­based interactive decision support in biomedicine. In E-G. Talbi, & A. Y. Zomaya (Eds.), Grid computing for bioinformatics and computational biology (pp. 225-246). (Wiley series on bioinformatics : computational techniques and engineering). Hoboken, NJ: Wiley-Interscience. DOI: 10.1002/9780470191637.ch10  [details] 
  • Guisado, J. L., Fernández de Vega, F., Jiménez Morales, F., Iskra, K. A., & Sloot, P. M. A. (2008). Parallel Cellular Automata-based simulation of laser dynamics using dynamic load balancing. In Ó. Garnica (Ed.), First International Workshop on Parallel Architectures and Bioinspired Algorithms (pp. 49-55). Madrid: Universidad Complutense de Madrid. [details] 
  • Guisado, J. L., Fernández de Vega, F., Jiménez Morales, F., Iskra, K. A., & Sloot, P. M. A. (2008). Using cellular automata for parallel simulation of laser dynamics with dynamic load balancing. International Journal of High Performance Systems Architecture (IJHPSA), 1(4), 251-259. DOI: 10.1504/IJHPSA.2008.024209  [details] 
  • Guo, Z., Sloot, P. M. A., & Tay, J. C. (2008). A hybrid agent-based approach for modeling microbiological systems. Journal of Theoretical Biology, 255(2), 163-175. DOI: 10.1016/j.jtbi.2008.08.008  [details] 
  • Huang, H-C., Konagaya, A., Lanza, V., & Sloot, P. M. A. (2008). Guest Editorial Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid. IEEE Transactions on Information Technology in Biomedicine, 12(2), 133-137. DOI: 10.1109/TITB.2008.918585  [details] 

2014

  • Melnikova, N. B., Jordan, D., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2014). Slope Instability of the Earthen Levee in Boston, UK: Numerical Simulation and Sensor Data Analysis. Ithaca, NY: arXiv.org. [details] 
  • Abramson, D., Lees, M., Krzhizhanovskaya, V. V., Dongarra, J., & Sloot, P. M. A. (2014). Big Data Meets Computational Science: preface for ICCS 2014. Procedia Computer Science, 29, 1-7. DOI: 10.1016/j.procs.2014.04.002  [details] 

2013

  • Sloot, P. M. A., Kampis, G., & Gulyás, L. (2013). Advances in dynamic temporal networks: understanding the temporal dynamics of complex adaptive networks. The European Physical Journal - Special Topics, 222(6), 1287-1293. DOI: 10.1140/epjst/e2013-01926-8  [details] 

2012

  • Sloot, P. M. A., & Quax, R. (2012). Information processing as a paradigm to model and simulate complex systems. Journal of Computational Science, 3(5), 247-249. DOI: 10.1016/j.jocs.2012.07.001  [details] 
  • Ali, H., Shi, Y., Khazanchi, D., Lees, M., van Albada, G. D., Dongarra, J., & Sloot, P. M. A. (2012). Empowering Science through Computing, preface for ICCS 2012. Procedia Computer Science, 9, 1-6. DOI: 10.1016/j.procs.2012.04.001  [details] 

2011

  • Bui, Q. C., & Sloot, P. M. A. (2011). Extracting biological events from text using simple syntactic patterns. In Proceedings of BioNLP Shared Task 2011 Workshop: Portland, Oregon, USA, 24 June, 2011 (pp. 143-146). Stroudsburg, PA: Association for Computational Linguistics. [details] 
  • Zarrabi, N., Prosperi, M., de Luca, A., & Sloot, P. M. A. (2011). Inferring HIV transmission networks from epidemic and genetic information. In European Conference on Complex Systems, ECCS'11. (pp. 138)

2010

  • Hoekstra, A. G., Kroc, J., & Sloot, P. M. A. (2010). Introduction to modeling of complex systems using cellular automata. In A. G. Hoekstra, J. Kroc, & P. M. A. Sloot (Eds.), Simulating complex systems by cellular automata. (pp. 1-16). (Understanding complex systems). Heidelberg: Springer. DOI: 10.1007/978-3-642-12203-3_1  [details] 

2008

  • Ertaylan, G., & Sloot, P. M. A. (2008). A complex automata model of HIV-1 co-receptor tropism: Mutation rate prediction. In M. Bubak, M. Turała, & K. Wiatr (Eds.), Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings (pp. 85). Kraków: Academic Computer Centre CYFRONET AGH. [details] 
  • Sloot, P. M. A., Tirado-Ramos, A., Ertaylan, G., O Nuallain, B., van de Vijver, D., Boucher, C. A., & Bubak, M. (2008). VIROLAB: A distributed decision support system for viral disease treatment. In M. Bubak, M. Turała, & K. Wiatr (Eds.), Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings (pp. 33-34). Kraków: Academic Computer Centre CYFRONET AGH. [details] 

2011

2010

2008

  • Rycerz, K., Bubak, M., Sloot, P. M. A., & Getov, V. (2008). HLA component based environment for distributed multiscale simulations. (CoreGRID technical report; No. TR-0137). CoreGRID Institute on Grid Systems, Tools, and Environments. [details] 

2011

  • Botman, D., Kaandorp, J. A., & Sloot, P. (2011). An integrated approach to infer the gene network in early development of the cnidarian Nematostella venctensis. 101. Poster session presented at International Workshop: Searching for Eve, .

Award

  • Zarrabi, N., Mancini, E., Tay, J.C., Shahand, S. & Sloot, P.M.A. (2010): Modeling HIV-1 intracellular replication: two simulation approaches.

Book editor

  • Koumoutsakos, P., Lees, M., Krzhizhanovskaya, V., Dongarra, J., & Sloot, P. (2017). International Conference on Computational Science, ICCS 2017: 12-14 June 2017, Zurich, Switzerland. (Procedia Computer Science; Vol. 108). Elsevier. [details] 
  • Altintas, I., Norman, M., Dongarra, J., Krzhizhanovskaya, V. V., Lees, M., & Sloot, P. M. A. (2016). International Conference on Computational Science 2016, ICCS 2016: 6-8 June 2016, San Diego, California, USA. (Procedia Computer Science; Vol. 80). Elsevier. [details] 
  • Sato, M., Matsuoka, S., Sloot, P. M. A., van Albada, G. D., & Dongarra, J. (2011). Proceedings of the International Conference on Computational Science, ICCS 2011. (Procedia Computer Science; No. 4). Amsterdam: Elsevier. [details] 

2016

  • de Graaf, C. S. L. (2016). Efficient PDE based numerical estimation of credit and liquidity risk measures for realistic derivative portfolios [details] 
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